Department of Microbiology, Immunology, and Biochemistry

Research Output 1968 2019

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2019

Feature learning using stacked autoencoder for shared and multimodal fusion of medical images

Singh, V., Verma, N. K., Ul Islam, Z. & Cui, Y., Jan 1 2019, Advances in Intelligent Systems and Computing. Springer Verlag, p. 53-66 14 p. (Advances in Intelligent Systems and Computing; vol. 798).

Research output: Chapter in Book/Report/Conference proceedingChapter

Fusion reactions
Image analysis
Learning systems
Deep learning

Functional Analysis of Genetic Variants and Somatic Mutations Impacting MicroRNA-Target Recognition: Bioinformatics Resources

Ziebarth, J. D., Bhattacharya, A. & Cui, Y., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 101-120 20 p. (Methods in Molecular Biology; vol. 1970).

Research output: Chapter in Book/Report/Conference proceedingChapter

Computational Biology
MicroRNAs
Mutation
Untranslated RNA
Genetic Databases
2018

Fluorescence imaging of mycobacterial infection in live mice using fluorescent protein-expressing strains

Kong, Y. & Cirillo, J. D., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 75-85 11 p. (Methods in Molecular Biology; vol. 1790).

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical Imaging
Tuberculosis Vaccines
Lung
Bacterial Load
Mycobacterium bovis

NETosis and ETosis: Incompletely understood types of granulocyte death and their proposed adaptive benefits and costs

Radic, M., Jan 1 2018, Apoptosis and Beyond: The Many Ways Cells Die. wiley, p. 511-534 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Granulocytes
Chromatin
Cost-Benefit Analysis
Pathogens
Cell death

Recombinant E. coli dualistic role as an antigen-adjuvant delivery vehicle for oral immunization

Gomes-Solecki, M. & Richer, L., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 347-357 11 p. (Methods in Molecular Biology; vol. 1690).

Research output: Chapter in Book/Report/Conference proceedingChapter

Immunization
Escherichia coli
Antigens
Vaccines
Recombinant Proteins
2017

Aspects of peptidylarginine deiminase regulation that may predispose to autoreactivity against citrullinated proteins

Neeli, I. & Radic, M., Sep 20 2017, Protein Deimination in Human Health and Disease: Second Edition. Springer International Publishing, p. 11-32 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteins
protein-arginine deiminase
1 Citation (Scopus)

Precise network modeling of systems genetics data using the Bayesian network webserver

Ziebarth, J. D. & Cui, Y., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 319-335 17 p. (Methods in Molecular Biology; vol. 1488).

Research output: Chapter in Book/Report/Conference proceedingChapter

Information Systems
Genetic Models
Genotype
Learning
Phenotype
2016

Hantaan virus

Jonsson, C., Chu, Y. K. & Ontiveros, S. J., Apr 19 2016, Molecular Detection of Human Viral Pathogens. CRC Press, p. 649-660 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hantaan virus
Viruses
1 Citation (Scopus)

Innate immune recognition of hepatitis C virus

Li, K., Jan 1 2016, Hepatitis C Virus I: Cellular and Molecular Virology. Springer Japan, p. 299-329 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hepacivirus
Interferons
Innate Immunity
Infection
Liver
8 Citations (Scopus)

Single-vector, single-injection recombinant vesicular stomatitis virus vaccines against high-containment viruses

Whitt, M., Geisbert, T. W. & Mire, C. E., Apr 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 295-311 17 p. (Methods in Molecular Biology; vol. 1403).

Research output: Chapter in Book/Report/Conference proceedingChapter

Vesicular Stomatitis
Vaccines
Viruses
Injections
Reverse Genetics
2015

Pathogenic origins of fibrosis in the hypertensive heart disease that accompanies aldosteronism

McCullough, R. J., Sun, Y., Newman, K. P., Ramanathan, K., Guntaka, R. & Weber, K., Jan 1 2015, Cardiac Fibrosis and Heart Failure: Cause or Effect?. Springer International Publishing, p. 93-107 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hyperaldosteronism
Oxidative stress
Angiotensins
Ablation
Aldosterone
2014

Lactic acid bacteria vector vaccines

Gomes-Solecki, M., Jan 1 2014, Molecular Vaccines: From Prophylaxis to Therapy - Volume 2. Springer International Publishing, p. 767-779 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Lactic Acid
Vaccines
Bacteria
Antigens
Mucosal Immunity
1 Citation (Scopus)

Overview of rhabdo- and filoviruses

Pattnaik, A. K. & Whitt, M., Jan 1 2014, Biology and Pathogenesis of Rhabdo- and Filoviruses. World Scientific Publishing Co., p. 1-13 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Filoviridae
Rhabdoviridae
Viruses
Mononegavirales
Bornaviridae

Rhabdovirus glycoproteins

Gaudin, Y. & Whitt, M., Jan 1 2014, Biology and Pathogenesis of Rhabdo- and Filoviruses. World Scientific Publishing Co., p. 49-73 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Rhabdoviridae
Rabies virus
Glycoproteins
Vesicular Stomatitis
Viruses
2013

Lyme disease: Reservoir-targeted vaccines

Gomes-Solecki, M., Jan 1 2013, Molecular Vaccines: From Prophylaxis to Therapy-Volume 1. Springer-Verlag Vienna, p. 279-293 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Disease Reservoirs
Lyme Disease
Rabies
Vaccines
Local Government
2012

Bioinformatics Tools for Gene Function Prediction

Cui, Y., Feb 10 2012, Gene Discovery for Disease Models. John Wiley and Sons, p. 93-110 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bioinformatics
Computational Biology
Genes
8 Citations (Scopus)

The Ectocarpus Genome and Brown Algal Genomics. The Ectocarpus Genome Consortium.

Cock, J. M., Sterck, L., Ahmed, S., Allen, A. E., Amoutzias, G., Anthouard, V., Artiguenave, F., Arun, A., Aury, J. M., Badger, J. H., Beszteri, B., Billiau, K., Bonnet, E., Bothwell, J. H., Bowler, C., Boyen, C., Brownlee, C., Carrano, C. J., Charrier, B., Cho, G. Y. & 64 others, Coelho, S. M., Collén, J., Le Corguillé, G., Corre, E., Dartevelle, L., Da Silva, C., Delage, L., Delaroque, N., Dittami, S. M., Doulbeau, S., Elias, M., Farnham, G., Gachon, C. M. M., Godfroy, O., Gschloessl, B., Heesch, S., Jabbari, K., Jubin, C., Kawai, H., Kimura, K., Kloareg, B., Küpper, F. C., Lang, D., Le Bail, A., Luthringer, R., Leblanc, C., Lerouge, P., Lohr, M., Lopez, P. J., Macaisne, N., Martens, C., Maumus, F., Michel, G., Miranda-Saavedra, D., Morales, J., Moreau, H., Motomura, T., Nagasato, C., Napoli, C. A., Nelson, D., Nyvall-Collén, P., Peters, A. F., Pommier, C., Potin, P., Poulain, J., Quesneville, H., Read, B., Rensing, S. A., Ritter, A., Rousvoal, S., Samanta, M., Samson, G., Schroeder, D. C., Scornet, D., Ségurens, B., Strittmatter, M., Tonon, T., Tregear, J. W., Valentin, K., Von Dassow, P., Yamagishi, T., Rouzé, P., Van de Peer, Y. & Wincker, P., Jan 1 2012, Advances in Botanical Research. Academic Press Inc., p. 141-184 44 p. (Advances in Botanical Research; vol. 64).

Research output: Chapter in Book/Report/Conference proceedingChapter

genomics
genome
Phaeophyceae
Biological Sciences
metabolism
2007

Bridging genotype and phenotype: Causal pathways from DNA to complex traits

Cui, Y., Jan 1 2007, Current Topics in Human Genetics: Studies in Complex Diseases. World Scientific Publishing Co., p. 433-446 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Genetic Loci
Gene expression
Genotype
Phenotype
Gene Expression
2006
3 Citations (Scopus)

Vitamin K Dependent Proteins of Bone and Cartilage

Gundberg, C. M. & Nishimoto, S., Dec 1 2006, Dynamics of Bone and Cartilage Metabolism. Elsevier Inc., p. 55-70 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Vitamin K
Osteocalcin
Cartilage
Bone and Bones
Bone Matrix
2004
2 Citations (Scopus)

Antisense and antigene oligonucleotides: Structure, stability and delivery

Mahato, R. I., Ye, Z. & Guntaka, R., Jan 1 2004, Biomaterials for Delivery and Targeting of Proteins and Nucleic Acids. CRC Press, p. 569-600 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Antisense Oligonucleotides
Oligonucleotides
Gene Expression
Clinical Trials
Cytomegalovirus Retinitis