Ontology-inferred phylogeny reconstruction for analyzing the evolutionary relationships between species

Ontological inference versus cladistics

Arash Shaban-Nejad, Volker Haarslev

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Abstract

We propose the use of formal ontological inferencing, rather than cladistics, to reconstruct phylogeny trees and to analyze the evolutionary relationships between species. For this experiment, we focused on the phylogeny of fungi. Lexical chaining technique has been used for incremental population of evolving ontological elements. Also category theory has been employed to provide an underlying formalism for capturing and analyzing the evolutionary behavior of the system.

Original languageEnglish (US)
Title of host publication8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008
DOIs
StatePublished - Dec 1 2008
Event8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008 - Athens, Greece
Duration: Oct 8 2008Oct 10 2008

Publication series

Name8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008

Other

Other8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008
CountryGreece
CityAthens
Period10/8/0810/10/08

Fingerprint

Phylogeny
Ontology
Fungi
Population
Experiments

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Bioengineering

Cite this

Shaban-Nejad, A., & Haarslev, V. (2008). Ontology-inferred phylogeny reconstruction for analyzing the evolutionary relationships between species: Ontological inference versus cladistics. In 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008 [4696848] (8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008). https://doi.org/10.1109/BIBE.2008.4696848

Ontology-inferred phylogeny reconstruction for analyzing the evolutionary relationships between species : Ontological inference versus cladistics. / Shaban-Nejad, Arash; Haarslev, Volker.

8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008. 2008. 4696848 (8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Shaban-Nejad, A & Haarslev, V 2008, Ontology-inferred phylogeny reconstruction for analyzing the evolutionary relationships between species: Ontological inference versus cladistics. in 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008., 4696848, 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008, 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008, Athens, Greece, 10/8/08. https://doi.org/10.1109/BIBE.2008.4696848
Shaban-Nejad A, Haarslev V. Ontology-inferred phylogeny reconstruction for analyzing the evolutionary relationships between species: Ontological inference versus cladistics. In 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008. 2008. 4696848. (8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008). https://doi.org/10.1109/BIBE.2008.4696848
Shaban-Nejad, Arash ; Haarslev, Volker. / Ontology-inferred phylogeny reconstruction for analyzing the evolutionary relationships between species : Ontological inference versus cladistics. 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008. 2008. (8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008).
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