The 2008 update of the Aspergillus nidulans genome annotation

a community effort.

Jennifer Russo Wortman, Jane Mabey Gilsenan, Vinita Joardar, Jennifer Deegan, John Clutterbuck, Mikael R. Andersen, David Archer, Mojca Bencina, Gerhard Braus, Pedro Coutinho, Hans von Döhren, John Doonan, Arnold J.M. Driessen, Pawel Durek, Eduardo Espeso, Erzsébet Fekete, Michel Flipphi, Carlos Garcia Estrada, Steven Geysens, Gustavo Goldman & 66 others Piet W.J. de Groot, Kim Hansen, Steven D. Harris, Thorsten Heinekamp, Kerstin Helmstaedt, Bernard Henrissat, Gerald Hofmann, Tim Homan, Tetsuya Horio, Hiroyuki Horiuchi, Steve James, Meriel Jones, Levente Karaffa, Zsolt Karányi, Masashi Kato, Nancy Keller, Diane E. Kelly, Jan A.K.W. Kiel, Jung Mi Kim, Ida J. van der Klei, Frans M. Klis, Andriy Kovalchuk, Nada Krasevec, Christian P. Kubicek, B. Liu, Andrew Maccabe, Vera Meyer, Pete Mirabito, Márton Miskei, Magdalena Mos, Jonathan Mullins, David Nelson, Jens Nielsen, Berl R. Oakley, Stephen A. Osmani, Tiina Pakula, Andrzej Paszewski, Ian Paulsen, Sebastian Pilsyk, István Pócsi, Peter J. Punt, Arthur F.J. Ram, Qinghu Ren, Xavier Robellet, Geoff Robson, Bernhard Seiboth, Piet van Solingen, Thomas Specht, Jibin Sun, Naimeh Taheri-Talesh, Norio Takeshita, Dave Ussery, Patricia A. vanKuyk, Hans Visser, Peter J.I. van de Vondervoort, Ronald P. de Vries, Jonathan Walton, Xin Xiang, Y. Xiong, An Ping Zeng, Bernd W. Brandt, Michael J. Cornell, Cees A.M.J.J. van den Hondel, Jacob Visser, Stephen G. Oliver, Geoffrey Turner

Research output: Contribution to journalArticle

68 Citations (Scopus)

Abstract

The identification and annotation of protein-coding genes is one of the primary goals of whole-genome sequencing projects, and the accuracy of predicting the primary protein products of gene expression is vital to the interpretation of the available data and the design of downstream functional applications. Nevertheless, the comprehensive annotation of eukaryotic genomes remains a considerable challenge. Many genomes submitted to public databases, including those of major model organisms, contain significant numbers of wrong and incomplete gene predictions. We present a community-based reannotation of the Aspergillus nidulans genome with the primary goal of increasing the number and quality of protein functional assignments through the careful review of experts in the field of fungal biology.

Original languageEnglish (US)
JournalFungal genetics and biology : FG & B
Volume46 Suppl 1
DOIs
StatePublished - Jan 1 2009

Fingerprint

Aspergillus nidulans
Genome
Molecular Sequence Annotation
Proteins
Databases
Gene Expression
Genes

All Science Journal Classification (ASJC) codes

  • Microbiology
  • Genetics

Cite this

Wortman, J. R., Gilsenan, J. M., Joardar, V., Deegan, J., Clutterbuck, J., Andersen, M. R., ... Turner, G. (2009). The 2008 update of the Aspergillus nidulans genome annotation: a community effort. Fungal genetics and biology : FG & B, 46 Suppl 1. https://doi.org/10.1016/j.fgb.2008.12.003

The 2008 update of the Aspergillus nidulans genome annotation : a community effort. / Wortman, Jennifer Russo; Gilsenan, Jane Mabey; Joardar, Vinita; Deegan, Jennifer; Clutterbuck, John; Andersen, Mikael R.; Archer, David; Bencina, Mojca; Braus, Gerhard; Coutinho, Pedro; von Döhren, Hans; Doonan, John; Driessen, Arnold J.M.; Durek, Pawel; Espeso, Eduardo; Fekete, Erzsébet; Flipphi, Michel; Estrada, Carlos Garcia; Geysens, Steven; Goldman, Gustavo; de Groot, Piet W.J.; Hansen, Kim; Harris, Steven D.; Heinekamp, Thorsten; Helmstaedt, Kerstin; Henrissat, Bernard; Hofmann, Gerald; Homan, Tim; Horio, Tetsuya; Horiuchi, Hiroyuki; James, Steve; Jones, Meriel; Karaffa, Levente; Karányi, Zsolt; Kato, Masashi; Keller, Nancy; Kelly, Diane E.; Kiel, Jan A.K.W.; Kim, Jung Mi; van der Klei, Ida J.; Klis, Frans M.; Kovalchuk, Andriy; Krasevec, Nada; Kubicek, Christian P.; Liu, B.; Maccabe, Andrew; Meyer, Vera; Mirabito, Pete; Miskei, Márton; Mos, Magdalena; Mullins, Jonathan; Nelson, David; Nielsen, Jens; Oakley, Berl R.; Osmani, Stephen A.; Pakula, Tiina; Paszewski, Andrzej; Paulsen, Ian; Pilsyk, Sebastian; Pócsi, István; Punt, Peter J.; Ram, Arthur F.J.; Ren, Qinghu; Robellet, Xavier; Robson, Geoff; Seiboth, Bernhard; van Solingen, Piet; Specht, Thomas; Sun, Jibin; Taheri-Talesh, Naimeh; Takeshita, Norio; Ussery, Dave; vanKuyk, Patricia A.; Visser, Hans; van de Vondervoort, Peter J.I.; de Vries, Ronald P.; Walton, Jonathan; Xiang, Xin; Xiong, Y.; Zeng, An Ping; Brandt, Bernd W.; Cornell, Michael J.; van den Hondel, Cees A.M.J.J.; Visser, Jacob; Oliver, Stephen G.; Turner, Geoffrey.

In: Fungal genetics and biology : FG & B, Vol. 46 Suppl 1, 01.01.2009.

Research output: Contribution to journalArticle

Wortman, JR, Gilsenan, JM, Joardar, V, Deegan, J, Clutterbuck, J, Andersen, MR, Archer, D, Bencina, M, Braus, G, Coutinho, P, von Döhren, H, Doonan, J, Driessen, AJM, Durek, P, Espeso, E, Fekete, E, Flipphi, M, Estrada, CG, Geysens, S, Goldman, G, de Groot, PWJ, Hansen, K, Harris, SD, Heinekamp, T, Helmstaedt, K, Henrissat, B, Hofmann, G, Homan, T, Horio, T, Horiuchi, H, James, S, Jones, M, Karaffa, L, Karányi, Z, Kato, M, Keller, N, Kelly, DE, Kiel, JAKW, Kim, JM, van der Klei, IJ, Klis, FM, Kovalchuk, A, Krasevec, N, Kubicek, CP, Liu, B, Maccabe, A, Meyer, V, Mirabito, P, Miskei, M, Mos, M, Mullins, J, Nelson, D, Nielsen, J, Oakley, BR, Osmani, SA, Pakula, T, Paszewski, A, Paulsen, I, Pilsyk, S, Pócsi, I, Punt, PJ, Ram, AFJ, Ren, Q, Robellet, X, Robson, G, Seiboth, B, van Solingen, P, Specht, T, Sun, J, Taheri-Talesh, N, Takeshita, N, Ussery, D, vanKuyk, PA, Visser, H, van de Vondervoort, PJI, de Vries, RP, Walton, J, Xiang, X, Xiong, Y, Zeng, AP, Brandt, BW, Cornell, MJ, van den Hondel, CAMJJ, Visser, J, Oliver, SG & Turner, G 2009, 'The 2008 update of the Aspergillus nidulans genome annotation: a community effort.', Fungal genetics and biology : FG & B, vol. 46 Suppl 1. https://doi.org/10.1016/j.fgb.2008.12.003
Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, Andersen MR et al. The 2008 update of the Aspergillus nidulans genome annotation: a community effort. Fungal genetics and biology : FG & B. 2009 Jan 1;46 Suppl 1. https://doi.org/10.1016/j.fgb.2008.12.003
Wortman, Jennifer Russo ; Gilsenan, Jane Mabey ; Joardar, Vinita ; Deegan, Jennifer ; Clutterbuck, John ; Andersen, Mikael R. ; Archer, David ; Bencina, Mojca ; Braus, Gerhard ; Coutinho, Pedro ; von Döhren, Hans ; Doonan, John ; Driessen, Arnold J.M. ; Durek, Pawel ; Espeso, Eduardo ; Fekete, Erzsébet ; Flipphi, Michel ; Estrada, Carlos Garcia ; Geysens, Steven ; Goldman, Gustavo ; de Groot, Piet W.J. ; Hansen, Kim ; Harris, Steven D. ; Heinekamp, Thorsten ; Helmstaedt, Kerstin ; Henrissat, Bernard ; Hofmann, Gerald ; Homan, Tim ; Horio, Tetsuya ; Horiuchi, Hiroyuki ; James, Steve ; Jones, Meriel ; Karaffa, Levente ; Karányi, Zsolt ; Kato, Masashi ; Keller, Nancy ; Kelly, Diane E. ; Kiel, Jan A.K.W. ; Kim, Jung Mi ; van der Klei, Ida J. ; Klis, Frans M. ; Kovalchuk, Andriy ; Krasevec, Nada ; Kubicek, Christian P. ; Liu, B. ; Maccabe, Andrew ; Meyer, Vera ; Mirabito, Pete ; Miskei, Márton ; Mos, Magdalena ; Mullins, Jonathan ; Nelson, David ; Nielsen, Jens ; Oakley, Berl R. ; Osmani, Stephen A. ; Pakula, Tiina ; Paszewski, Andrzej ; Paulsen, Ian ; Pilsyk, Sebastian ; Pócsi, István ; Punt, Peter J. ; Ram, Arthur F.J. ; Ren, Qinghu ; Robellet, Xavier ; Robson, Geoff ; Seiboth, Bernhard ; van Solingen, Piet ; Specht, Thomas ; Sun, Jibin ; Taheri-Talesh, Naimeh ; Takeshita, Norio ; Ussery, Dave ; vanKuyk, Patricia A. ; Visser, Hans ; van de Vondervoort, Peter J.I. ; de Vries, Ronald P. ; Walton, Jonathan ; Xiang, Xin ; Xiong, Y. ; Zeng, An Ping ; Brandt, Bernd W. ; Cornell, Michael J. ; van den Hondel, Cees A.M.J.J. ; Visser, Jacob ; Oliver, Stephen G. ; Turner, Geoffrey. / The 2008 update of the Aspergillus nidulans genome annotation : a community effort. In: Fungal genetics and biology : FG & B. 2009 ; Vol. 46 Suppl 1.
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AU - Wortman, Jennifer Russo

AU - Gilsenan, Jane Mabey

AU - Joardar, Vinita

AU - Deegan, Jennifer

AU - Clutterbuck, John

AU - Andersen, Mikael R.

AU - Archer, David

AU - Bencina, Mojca

AU - Braus, Gerhard

AU - Coutinho, Pedro

AU - von Döhren, Hans

AU - Doonan, John

AU - Driessen, Arnold J.M.

AU - Durek, Pawel

AU - Espeso, Eduardo

AU - Fekete, Erzsébet

AU - Flipphi, Michel

AU - Estrada, Carlos Garcia

AU - Geysens, Steven

AU - Goldman, Gustavo

AU - de Groot, Piet W.J.

AU - Hansen, Kim

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AU - Kubicek, Christian P.

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AU - Oakley, Berl R.

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AU - Paszewski, Andrzej

AU - Paulsen, Ian

AU - Pilsyk, Sebastian

AU - Pócsi, István

AU - Punt, Peter J.

AU - Ram, Arthur F.J.

AU - Ren, Qinghu

AU - Robellet, Xavier

AU - Robson, Geoff

AU - Seiboth, Bernhard

AU - van Solingen, Piet

AU - Specht, Thomas

AU - Sun, Jibin

AU - Taheri-Talesh, Naimeh

AU - Takeshita, Norio

AU - Ussery, Dave

AU - vanKuyk, Patricia A.

AU - Visser, Hans

AU - van de Vondervoort, Peter J.I.

AU - de Vries, Ronald P.

AU - Walton, Jonathan

AU - Xiang, Xin

AU - Xiong, Y.

AU - Zeng, An Ping

AU - Brandt, Bernd W.

AU - Cornell, Michael J.

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