The tomato genome sequence provides insights into fleshy fruit evolution

Shusei Sato, Satoshi Tabata, Hideki Hirakawa, Erika Asamizu, Kenta Shirasawa, Sachiko Isobe, Takakazu Kaneko, Yasukazu Nakamura, Daisuke Shibata, Koh Aoki, Michael Egholm, James Knight, Robert Bogden, Changbao Li, Yang Shuang, Xun Xu, Shengkai Pan, Shifeng Cheng, Xin Liu, Yuanyuan Ren & 299 others Jun Wang, Alessandro Albiero, Francesca Dal Pero, Sara Todesco, Joyce Van Eck, Robert M. Buels, Aureliano Bombarely, Joseph R. Gosselin, Minyun Huang, Jonathan A. Leto, Naama Menda, Susan Strickler, Linyong Mao, Shan Gao, Isaak Y. Tecle, Thomas York, Yi Zheng, Julia T. Vrebalov, Jemin Lee, Silin Zhong, Lukas A. Mueller, Willem J. Stiekema, Paolo Ribeca, Tyler Alioto, Wencai Yang, Sanwen Huang, Yongchen Du, Zhonghua Zhang, Jianchang Gao, Yanmei Guo, Xiaoxuan Wang, Ying Li, Jun He, Chuanyou Li, Zhukuan Cheng, Jianru Zuo, Jianfeng Ren, Jiuhai Zhao, Liuhua Yan, Hongling Jiang, Bao Wang, Hongshuang Li, Zhenjun Li, Fuyou Fu, Bingtang Chen, Bin Han, Qi Feng, Danlin Fan, Ying Wang, Hongqing Ling, Yongbiao Xue, Doreen Ware, W. Richard McCombie, Zachary B. Lippman, Jer Ming Chia, Ke Jiang, Shiran Pasternak, Laura Gelley, Melissa Kramer, Lorinda K. Anderson, Song Bin Chang, Suzanne M. Royer, Lindsay A. Shearer, Stephen M. Stack, Jocelyn K.C. Rose, Yimin Xu, Nancy Eannetta, Antonio J. Matas, Ryan McQuinn, Steven D. Tanksley, Francisco Camara, Roderic Guigó, Stephane Rombauts, Jeffrey Fawcett, Yves Van De Peer, Dani Zamir, Chunbo Liang, Manuel Spannagl, Heidrun Gundlach, Remy Bruggmann, Klaus Mayer, Zhiqi Jia, Junhong Zhang, Zhibiao Ye, Gerard J. Bishop, Sarah Butcher, Rosa Lopez-Cobollo, Daniel Buchan, Ioannis Filippis, James Abbott, Institute Rekha Dixit, Manju Singh, Archana Singh, Jitendra Kumar Pal, Awadhesh Pandit, Pradeep Kumar Singh, Ajay Kumar Mahato, Vivek Dogra, Kishor Gaikwad, Tilak Raj Sharma, Trilochan Mohapatra, Nagendra Kumar Singh, Mathilde Causse, Christophe Rothan, Celine Noirot, Arnaud Bellec, Christophe Klopp, Corinne Delalande, Helene Berges, Jerome Mariette, Pierre Frasse, Sonia Vautrin, Toulouse Mohamed Zouine, Alain Latché, Christine Rousseau, Farid Regad, Jean Claude Pech, Murielle Philippot, Mondher Bouzayen, Pierre Pericard, Sonia Osorio, Asuncion Fernandez Del Carmen, Antonio Monforte, Antonio Granell, Rafael Fernandez-Muñoz, Mariana Conte, Gabriel Lichtenstein, Fernando Carrari, Gianluca De Bellis, Fabio Fuligni, Clelia Peano, Silvana Grandillo, Pasquale Termolino, Marco Pietrella, Elio Fantini, Giulia Falcone, Alessia Fiore, Giovanni Giuliano, Loredana Lopez, Paolo Facella, Gaetano Perrotta, Loretta Daddiego, Glenn Bryan, Biology Modesto Orozco, Xavier Pastor, David Torrents, Marco G.M. Van Schriek, Richard M.C. Feron, Jan Van Oeveren, Peter De Heer, Lorena Da Ponte, Saskia Jacobs-Oomen, Mike Cariaso, Marcel Prins, Michiel J.T. Van Eijk, Antoine Janssen, J. J. Van Haaren, Sung -HwanJo, Jungeun Kim, Suk Yoon Kwon, Sangmi Kim, Dal Hoe Koo, Sanghyeob Lee, Christopher Clouser, Alain Rico, Asis Hallab, Christiane Gebhardt, Kathrin Klee, Anika Jöcker, Jens Warfsmann, Ulrike Göbel, Shingo Kawamura, Entaro Yano, Jamie D. Sherman, Hiroyuki Fukuoka, Satomi Negoro, Sarita Bhutty, Parul Chowdhury, Debasis Chattopadhyay, Erwin Datema, Sandra Smit, Elio G.W.M. Schijlen, Jose Van De Belt, Jan C. Van Haarst, Sander A. Peters, Marjo J. Van Staveren, Marleen H.C. Henkens, Paul J.W. Mooyman, Thamara Hesselink, Roeland C.H.J. Van Ham, Guoyong Jiang, Marcus Droege, Doil Choi, Byung Cheol Kang, Byung Dong Kim, Minkyu Park, Seungill Kim, Seon In Yeom, Yong Hwan Lee, Yang Do Choi, Guangcun Li, Jianwei Gao, Yongsheng Liu, Shengxiong Huang, Victoria Fernandez-Pedrosa, Carmen Collado, Sheila Zuñ Iga, Guoping Wang, Rebecca Cade, Robert A. Dietrich, Jane Rogers, Sandra Knapp, Zhangjun Fei, Ruth A. White, Theodore W. Thannhauser, James J. Giovannoni, Miguel Angel Botella, Louise Gilbert, Fabra Ramon Gonzalez, Jose Luis Goicoechea, Yeisoo Yu, David Kudrna, Kristi Collura, Marina Wissotski, Rod Wing, Blake C. Meyers, Aishwarya Bala Gurazada, Pamela J. Green, Saloni Mathur, Shailendra Vyas, Amolkumar U. Solanke, Rahul Kumar, Vikrant Gupta, Arun K. Sharma, Paramjit Khurana, Jitendra P. Khurana, Akhilesh K. Tyagi, Tamas Dalmay, Irina Mohorianu, Brandon Walts, Srikar Chamala, W. Brad Barbazuk, Jingping Li, Hui Guo, Tae Ho Lee, Yupeng Wang, Dong Zhang, Andrew H. Paterson, Xiyin Wang, Haibao Tang, Amalia Barone, Maria Luisa Chiusano, Maria Raffaella Ercolano, Nunzio D'Agostino, Miriam Di Filippo, Alessandra Traini, Walter Sanseverino, Luigi Frusciante, Graham B. Seymour, Mounir Elharam, Ying Fu, Axin Hua, Steven Kenton, Jennifer Lewis, Shaoping Lin, Fares Najar, Hongshing Lai, Baifang Qin, Ruihua Shi, Chunmei Qu, Douglas White, James White, Yanbo Xing, Keqin Yang, Jing Yi, Ziyun Yao, Liping Zhou, Bruce A. Roe, Alessandro Vezzi, Michela D'Angelo, Rosanna Zimbello, Riccardo Schiavon, Elisa Caniato, Chiara Rigobello, Davide Campagna, Nicola Vitulo, Giorgio Valle, David Nelson, Emanuele De Paoli, Dora Szinay, Hans H. De Jong, Yuling Bai, Richard G.F. Visser, Reném Klein Lankhorst, Helen Beasley, Karen McLaren, Christine Nicholson, Claire Riddle, Giulio Gianese

Research output: Contribution to journalArticle

1459 Citations (Scopus)

Abstract

Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium, and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness.

Original languageEnglish (US)
Pages (from-to)635-641
Number of pages7
JournalNature
Volume485
Issue number7400
DOIs
StatePublished - Oct 23 2012

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Lycopersicon esculentum
Fruit
Solanum tuberosum
Solanum
Genome
Genes
Angiosperms
Soybeans
Arabidopsis
Ecosystem
Nucleotides
Color
RNA

All Science Journal Classification (ASJC) codes

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Sato, S., Tabata, S., Hirakawa, H., Asamizu, E., Shirasawa, K., Isobe, S., ... Gianese, G. (2012). The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 485(7400), 635-641. https://doi.org/10.1038/nature11119

The tomato genome sequence provides insights into fleshy fruit evolution. / Sato, Shusei; Tabata, Satoshi; Hirakawa, Hideki; Asamizu, Erika; Shirasawa, Kenta; Isobe, Sachiko; Kaneko, Takakazu; Nakamura, Yasukazu; Shibata, Daisuke; Aoki, Koh; Egholm, Michael; Knight, James; Bogden, Robert; Li, Changbao; Shuang, Yang; Xu, Xun; Pan, Shengkai; Cheng, Shifeng; Liu, Xin; Ren, Yuanyuan; Wang, Jun; Albiero, Alessandro; Dal Pero, Francesca; Todesco, Sara; Van Eck, Joyce; Buels, Robert M.; Bombarely, Aureliano; Gosselin, Joseph R.; Huang, Minyun; Leto, Jonathan A.; Menda, Naama; Strickler, Susan; Mao, Linyong; Gao, Shan; Tecle, Isaak Y.; York, Thomas; Zheng, Yi; Vrebalov, Julia T.; Lee, Jemin; Zhong, Silin; Mueller, Lukas A.; Stiekema, Willem J.; Ribeca, Paolo; Alioto, Tyler; Yang, Wencai; Huang, Sanwen; Du, Yongchen; Zhang, Zhonghua; Gao, Jianchang; Guo, Yanmei; Wang, Xiaoxuan; Li, Ying; He, Jun; Li, Chuanyou; Cheng, Zhukuan; Zuo, Jianru; Ren, Jianfeng; Zhao, Jiuhai; Yan, Liuhua; Jiang, Hongling; Wang, Bao; Li, Hongshuang; Li, Zhenjun; Fu, Fuyou; Chen, Bingtang; Han, Bin; Feng, Qi; Fan, Danlin; Wang, Ying; Ling, Hongqing; Xue, Yongbiao; Ware, Doreen; Richard McCombie, W.; Lippman, Zachary B.; Chia, Jer Ming; Jiang, Ke; Pasternak, Shiran; Gelley, Laura; Kramer, Melissa; Anderson, Lorinda K.; Chang, Song Bin; Royer, Suzanne M.; Shearer, Lindsay A.; Stack, Stephen M.; Rose, Jocelyn K.C.; Xu, Yimin; Eannetta, Nancy; Matas, Antonio J.; McQuinn, Ryan; Tanksley, Steven D.; Camara, Francisco; Guigó, Roderic; Rombauts, Stephane; Fawcett, Jeffrey; Van De Peer, Yves; Zamir, Dani; Liang, Chunbo; Spannagl, Manuel; Gundlach, Heidrun; Bruggmann, Remy; Mayer, Klaus; Jia, Zhiqi; Zhang, Junhong; Ye, Zhibiao; Bishop, Gerard J.; Butcher, Sarah; Lopez-Cobollo, Rosa; Buchan, Daniel; Filippis, Ioannis; Abbott, James; Dixit, Institute Rekha; Singh, Manju; Singh, Archana; Pal, Jitendra Kumar; Pandit, Awadhesh; Singh, Pradeep Kumar; Mahato, Ajay Kumar; Dogra, Vivek; Gaikwad, Kishor; Sharma, Tilak Raj; Mohapatra, Trilochan; Singh, Nagendra Kumar; Causse, Mathilde; Rothan, Christophe; Noirot, Celine; Bellec, Arnaud; Klopp, Christophe; Delalande, Corinne; Berges, Helene; Mariette, Jerome; Frasse, Pierre; Vautrin, Sonia; Zouine, Toulouse Mohamed; Latché, Alain; Rousseau, Christine; Regad, Farid; Pech, Jean Claude; Philippot, Murielle; Bouzayen, Mondher; Pericard, Pierre; Osorio, Sonia; Del Carmen, Asuncion Fernandez; Monforte, Antonio; Granell, Antonio; Fernandez-Muñoz, Rafael; Conte, Mariana; Lichtenstein, Gabriel; Carrari, Fernando; De Bellis, Gianluca; Fuligni, Fabio; Peano, Clelia; Grandillo, Silvana; Termolino, Pasquale; Pietrella, Marco; Fantini, Elio; Falcone, Giulia; Fiore, Alessia; Giuliano, Giovanni; Lopez, Loredana; Facella, Paolo; Perrotta, Gaetano; Daddiego, Loretta; Bryan, Glenn; Orozco, Biology Modesto; Pastor, Xavier; Torrents, David; Van Schriek, Marco G.M.; Feron, Richard M.C.; Van Oeveren, Jan; De Heer, Peter; Da Ponte, Lorena; Jacobs-Oomen, Saskia; Cariaso, Mike; Prins, Marcel; Van Eijk, Michiel J.T.; Janssen, Antoine; Van Haaren, J. J.; -HwanJo, Sung; Kim, Jungeun; Kwon, Suk Yoon; Kim, Sangmi; Koo, Dal Hoe; Lee, Sanghyeob; Clouser, Christopher; Rico, Alain; Hallab, Asis; Gebhardt, Christiane; Klee, Kathrin; Jöcker, Anika; Warfsmann, Jens; Göbel, Ulrike; Kawamura, Shingo; Yano, Entaro; Sherman, Jamie D.; Fukuoka, Hiroyuki; Negoro, Satomi; Bhutty, Sarita; Chowdhury, Parul; Chattopadhyay, Debasis; Datema, Erwin; Smit, Sandra; Schijlen, Elio G.W.M.; Van De Belt, Jose; Van Haarst, Jan C.; Peters, Sander A.; Van Staveren, Marjo J.; Henkens, Marleen H.C.; Mooyman, Paul J.W.; Hesselink, Thamara; Van Ham, Roeland C.H.J.; Jiang, Guoyong; Droege, Marcus; Choi, Doil; Kang, Byung Cheol; Kim, Byung Dong; Park, Minkyu; Kim, Seungill; Yeom, Seon In; Lee, Yong Hwan; Choi, Yang Do; Li, Guangcun; Gao, Jianwei; Liu, Yongsheng; Huang, Shengxiong; Fernandez-Pedrosa, Victoria; Collado, Carmen; Zuñ Iga, Sheila; Wang, Guoping; Cade, Rebecca; Dietrich, Robert A.; Rogers, Jane; Knapp, Sandra; Fei, Zhangjun; White, Ruth A.; Thannhauser, Theodore W.; Giovannoni, James J.; Botella, Miguel Angel; Gilbert, Louise; Gonzalez, Fabra Ramon; Goicoechea, Jose Luis; Yu, Yeisoo; Kudrna, David; Collura, Kristi; Wissotski, Marina; Wing, Rod; Meyers, Blake C.; Gurazada, Aishwarya Bala; Green, Pamela J.; Mathur, Saloni; Vyas, Shailendra; Solanke, Amolkumar U.; Kumar, Rahul; Gupta, Vikrant; Sharma, Arun K.; Khurana, Paramjit; Khurana, Jitendra P.; Tyagi, Akhilesh K.; Dalmay, Tamas; Mohorianu, Irina; Walts, Brandon; Chamala, Srikar; Barbazuk, W. Brad; Li, Jingping; Guo, Hui; Lee, Tae Ho; Wang, Yupeng; Zhang, Dong; Paterson, Andrew H.; Wang, Xiyin; Tang, Haibao; Barone, Amalia; Chiusano, Maria Luisa; Ercolano, Maria Raffaella; D'Agostino, Nunzio; Di Filippo, Miriam; Traini, Alessandra; Sanseverino, Walter; Frusciante, Luigi; Seymour, Graham B.; Elharam, Mounir; Fu, Ying; Hua, Axin; Kenton, Steven; Lewis, Jennifer; Lin, Shaoping; Najar, Fares; Lai, Hongshing; Qin, Baifang; Shi, Ruihua; Qu, Chunmei; White, Douglas; White, James; Xing, Yanbo; Yang, Keqin; Yi, Jing; Yao, Ziyun; Zhou, Liping; Roe, Bruce A.; Vezzi, Alessandro; D'Angelo, Michela; Zimbello, Rosanna; Schiavon, Riccardo; Caniato, Elisa; Rigobello, Chiara; Campagna, Davide; Vitulo, Nicola; Valle, Giorgio; Nelson, David; De Paoli, Emanuele; Szinay, Dora; De Jong, Hans H.; Bai, Yuling; Visser, Richard G.F.; Lankhorst, Reném Klein; Beasley, Helen; McLaren, Karen; Nicholson, Christine; Riddle, Claire; Gianese, Giulio.

In: Nature, Vol. 485, No. 7400, 23.10.2012, p. 635-641.

Research output: Contribution to journalArticle

Sato, S, Tabata, S, Hirakawa, H, Asamizu, E, Shirasawa, K, Isobe, S, Kaneko, T, Nakamura, Y, Shibata, D, Aoki, K, Egholm, M, Knight, J, Bogden, R, Li, C, Shuang, Y, Xu, X, Pan, S, Cheng, S, Liu, X, Ren, Y, Wang, J, Albiero, A, Dal Pero, F, Todesco, S, Van Eck, J, Buels, RM, Bombarely, A, Gosselin, JR, Huang, M, Leto, JA, Menda, N, Strickler, S, Mao, L, Gao, S, Tecle, IY, York, T, Zheng, Y, Vrebalov, JT, Lee, J, Zhong, S, Mueller, LA, Stiekema, WJ, Ribeca, P, Alioto, T, Yang, W, Huang, S, Du, Y, Zhang, Z, Gao, J, Guo, Y, Wang, X, Li, Y, He, J, Li, C, Cheng, Z, Zuo, J, Ren, J, Zhao, J, Yan, L, Jiang, H, Wang, B, Li, H, Li, Z, Fu, F, Chen, B, Han, B, Feng, Q, Fan, D, Wang, Y, Ling, H, Xue, Y, Ware, D, Richard McCombie, W, Lippman, ZB, Chia, JM, Jiang, K, Pasternak, S, Gelley, L, Kramer, M, Anderson, LK, Chang, SB, Royer, SM, Shearer, LA, Stack, SM, Rose, JKC, Xu, Y, Eannetta, N, Matas, AJ, McQuinn, R, Tanksley, SD, Camara, F, Guigó, R, Rombauts, S, Fawcett, J, Van De Peer, Y, Zamir, D, Liang, C, Spannagl, M, Gundlach, H, Bruggmann, R, Mayer, K, Jia, Z, Zhang, J, Ye, Z, Bishop, GJ, Butcher, S, Lopez-Cobollo, R, Buchan, D, Filippis, I, Abbott, J, Dixit, IR, Singh, M, Singh, A, Pal, JK, Pandit, A, Singh, PK, Mahato, AK, Dogra, V, Gaikwad, K, Sharma, TR, Mohapatra, T, Singh, NK, Causse, M, Rothan, C, Noirot, C, Bellec, A, Klopp, C, Delalande, C, Berges, H, Mariette, J, Frasse, P, Vautrin, S, Zouine, TM, Latché, A, Rousseau, C, Regad, F, Pech, JC, Philippot, M, Bouzayen, M, Pericard, P, Osorio, S, Del Carmen, AF, Monforte, A, Granell, A, Fernandez-Muñoz, R, Conte, M, Lichtenstein, G, Carrari, F, De Bellis, G, Fuligni, F, Peano, C, Grandillo, S, Termolino, P, Pietrella, M, Fantini, E, Falcone, G, Fiore, A, Giuliano, G, Lopez, L, Facella, P, Perrotta, G, Daddiego, L, Bryan, G, Orozco, BM, Pastor, X, Torrents, D, Van Schriek, MGM, Feron, RMC, Van Oeveren, J, De Heer, P, Da Ponte, L, Jacobs-Oomen, S, Cariaso, M, Prins, M, Van Eijk, MJT, Janssen, A, Van Haaren, JJ, -HwanJo, S, Kim, J, Kwon, SY, Kim, S, Koo, DH, Lee, S, Clouser, C, Rico, A, Hallab, A, Gebhardt, C, Klee, K, Jöcker, A, Warfsmann, J, Göbel, U, Kawamura, S, Yano, E, Sherman, JD, Fukuoka, H, Negoro, S, Bhutty, S, Chowdhury, P, Chattopadhyay, D, Datema, E, Smit, S, Schijlen, EGWM, Van De Belt, J, Van Haarst, JC, Peters, SA, Van Staveren, MJ, Henkens, MHC, Mooyman, PJW, Hesselink, T, Van Ham, RCHJ, Jiang, G, Droege, M, Choi, D, Kang, BC, Kim, BD, Park, M, Kim, S, Yeom, SI, Lee, YH, Choi, YD, Li, G, Gao, J, Liu, Y, Huang, S, Fernandez-Pedrosa, V, Collado, C, Zuñ Iga, S, Wang, G, Cade, R, Dietrich, RA, Rogers, J, Knapp, S, Fei, Z, White, RA, Thannhauser, TW, Giovannoni, JJ, Botella, MA, Gilbert, L, Gonzalez, FR, Goicoechea, JL, Yu, Y, Kudrna, D, Collura, K, Wissotski, M, Wing, R, Meyers, BC, Gurazada, AB, Green, PJ, Mathur, S, Vyas, S, Solanke, AU, Kumar, R, Gupta, V, Sharma, AK, Khurana, P, Khurana, JP, Tyagi, AK, Dalmay, T, Mohorianu, I, Walts, B, Chamala, S, Barbazuk, WB, Li, J, Guo, H, Lee, TH, Wang, Y, Zhang, D, Paterson, AH, Wang, X, Tang, H, Barone, A, Chiusano, ML, Ercolano, MR, D'Agostino, N, Di Filippo, M, Traini, A, Sanseverino, W, Frusciante, L, Seymour, GB, Elharam, M, Fu, Y, Hua, A, Kenton, S, Lewis, J, Lin, S, Najar, F, Lai, H, Qin, B, Shi, R, Qu, C, White, D, White, J, Xing, Y, Yang, K, Yi, J, Yao, Z, Zhou, L, Roe, BA, Vezzi, A, D'Angelo, M, Zimbello, R, Schiavon, R, Caniato, E, Rigobello, C, Campagna, D, Vitulo, N, Valle, G, Nelson, D, De Paoli, E, Szinay, D, De Jong, HH, Bai, Y, Visser, RGF, Lankhorst, RK, Beasley, H, McLaren, K, Nicholson, C, Riddle, C & Gianese, G 2012, 'The tomato genome sequence provides insights into fleshy fruit evolution', Nature, vol. 485, no. 7400, pp. 635-641. https://doi.org/10.1038/nature11119
Sato S, Tabata S, Hirakawa H, Asamizu E, Shirasawa K, Isobe S et al. The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 2012 Oct 23;485(7400):635-641. https://doi.org/10.1038/nature11119
Sato, Shusei ; Tabata, Satoshi ; Hirakawa, Hideki ; Asamizu, Erika ; Shirasawa, Kenta ; Isobe, Sachiko ; Kaneko, Takakazu ; Nakamura, Yasukazu ; Shibata, Daisuke ; Aoki, Koh ; Egholm, Michael ; Knight, James ; Bogden, Robert ; Li, Changbao ; Shuang, Yang ; Xu, Xun ; Pan, Shengkai ; Cheng, Shifeng ; Liu, Xin ; Ren, Yuanyuan ; Wang, Jun ; Albiero, Alessandro ; Dal Pero, Francesca ; Todesco, Sara ; Van Eck, Joyce ; Buels, Robert M. ; Bombarely, Aureliano ; Gosselin, Joseph R. ; Huang, Minyun ; Leto, Jonathan A. ; Menda, Naama ; Strickler, Susan ; Mao, Linyong ; Gao, Shan ; Tecle, Isaak Y. ; York, Thomas ; Zheng, Yi ; Vrebalov, Julia T. ; Lee, Jemin ; Zhong, Silin ; Mueller, Lukas A. ; Stiekema, Willem J. ; Ribeca, Paolo ; Alioto, Tyler ; Yang, Wencai ; Huang, Sanwen ; Du, Yongchen ; Zhang, Zhonghua ; Gao, Jianchang ; Guo, Yanmei ; Wang, Xiaoxuan ; Li, Ying ; He, Jun ; Li, Chuanyou ; Cheng, Zhukuan ; Zuo, Jianru ; Ren, Jianfeng ; Zhao, Jiuhai ; Yan, Liuhua ; Jiang, Hongling ; Wang, Bao ; Li, Hongshuang ; Li, Zhenjun ; Fu, Fuyou ; Chen, Bingtang ; Han, Bin ; Feng, Qi ; Fan, Danlin ; Wang, Ying ; Ling, Hongqing ; Xue, Yongbiao ; Ware, Doreen ; Richard McCombie, W. ; Lippman, Zachary B. ; Chia, Jer Ming ; Jiang, Ke ; Pasternak, Shiran ; Gelley, Laura ; Kramer, Melissa ; Anderson, Lorinda K. ; Chang, Song Bin ; Royer, Suzanne M. ; Shearer, Lindsay A. ; Stack, Stephen M. ; Rose, Jocelyn K.C. ; Xu, Yimin ; Eannetta, Nancy ; Matas, Antonio J. ; McQuinn, Ryan ; Tanksley, Steven D. ; Camara, Francisco ; Guigó, Roderic ; Rombauts, Stephane ; Fawcett, Jeffrey ; Van De Peer, Yves ; Zamir, Dani ; Liang, Chunbo ; Spannagl, Manuel ; Gundlach, Heidrun ; Bruggmann, Remy ; Mayer, Klaus ; Jia, Zhiqi ; Zhang, Junhong ; Ye, Zhibiao ; Bishop, Gerard J. ; Butcher, Sarah ; Lopez-Cobollo, Rosa ; Buchan, Daniel ; Filippis, Ioannis ; Abbott, James ; Dixit, Institute Rekha ; Singh, Manju ; Singh, Archana ; Pal, Jitendra Kumar ; Pandit, Awadhesh ; Singh, Pradeep Kumar ; Mahato, Ajay Kumar ; Dogra, Vivek ; Gaikwad, Kishor ; Sharma, Tilak Raj ; Mohapatra, Trilochan ; Singh, Nagendra Kumar ; Causse, Mathilde ; Rothan, Christophe ; Noirot, Celine ; Bellec, Arnaud ; Klopp, Christophe ; Delalande, Corinne ; Berges, Helene ; Mariette, Jerome ; Frasse, Pierre ; Vautrin, Sonia ; Zouine, Toulouse Mohamed ; Latché, Alain ; Rousseau, Christine ; Regad, Farid ; Pech, Jean Claude ; Philippot, Murielle ; Bouzayen, Mondher ; Pericard, Pierre ; Osorio, Sonia ; Del Carmen, Asuncion Fernandez ; Monforte, Antonio ; Granell, Antonio ; Fernandez-Muñoz, Rafael ; Conte, Mariana ; Lichtenstein, Gabriel ; Carrari, Fernando ; De Bellis, Gianluca ; Fuligni, Fabio ; Peano, Clelia ; Grandillo, Silvana ; Termolino, Pasquale ; Pietrella, Marco ; Fantini, Elio ; Falcone, Giulia ; Fiore, Alessia ; Giuliano, Giovanni ; Lopez, Loredana ; Facella, Paolo ; Perrotta, Gaetano ; Daddiego, Loretta ; Bryan, Glenn ; Orozco, Biology Modesto ; Pastor, Xavier ; Torrents, David ; Van Schriek, Marco G.M. ; Feron, Richard M.C. ; Van Oeveren, Jan ; De Heer, Peter ; Da Ponte, Lorena ; Jacobs-Oomen, Saskia ; Cariaso, Mike ; Prins, Marcel ; Van Eijk, Michiel J.T. ; Janssen, Antoine ; Van Haaren, J. J. ; -HwanJo, Sung ; Kim, Jungeun ; Kwon, Suk Yoon ; Kim, Sangmi ; Koo, Dal Hoe ; Lee, Sanghyeob ; Clouser, Christopher ; Rico, Alain ; Hallab, Asis ; Gebhardt, Christiane ; Klee, Kathrin ; Jöcker, Anika ; Warfsmann, Jens ; Göbel, Ulrike ; Kawamura, Shingo ; Yano, Entaro ; Sherman, Jamie D. ; Fukuoka, Hiroyuki ; Negoro, Satomi ; Bhutty, Sarita ; Chowdhury, Parul ; Chattopadhyay, Debasis ; Datema, Erwin ; Smit, Sandra ; Schijlen, Elio G.W.M. ; Van De Belt, Jose ; Van Haarst, Jan C. ; Peters, Sander A. ; Van Staveren, Marjo J. ; Henkens, Marleen H.C. ; Mooyman, Paul J.W. ; Hesselink, Thamara ; Van Ham, Roeland C.H.J. ; Jiang, Guoyong ; Droege, Marcus ; Choi, Doil ; Kang, Byung Cheol ; Kim, Byung Dong ; Park, Minkyu ; Kim, Seungill ; Yeom, Seon In ; Lee, Yong Hwan ; Choi, Yang Do ; Li, Guangcun ; Gao, Jianwei ; Liu, Yongsheng ; Huang, Shengxiong ; Fernandez-Pedrosa, Victoria ; Collado, Carmen ; Zuñ Iga, Sheila ; Wang, Guoping ; Cade, Rebecca ; Dietrich, Robert A. ; Rogers, Jane ; Knapp, Sandra ; Fei, Zhangjun ; White, Ruth A. ; Thannhauser, Theodore W. ; Giovannoni, James J. ; Botella, Miguel Angel ; Gilbert, Louise ; Gonzalez, Fabra Ramon ; Goicoechea, Jose Luis ; Yu, Yeisoo ; Kudrna, David ; Collura, Kristi ; Wissotski, Marina ; Wing, Rod ; Meyers, Blake C. ; Gurazada, Aishwarya Bala ; Green, Pamela J. ; Mathur, Saloni ; Vyas, Shailendra ; Solanke, Amolkumar U. ; Kumar, Rahul ; Gupta, Vikrant ; Sharma, Arun K. ; Khurana, Paramjit ; Khurana, Jitendra P. ; Tyagi, Akhilesh K. ; Dalmay, Tamas ; Mohorianu, Irina ; Walts, Brandon ; Chamala, Srikar ; Barbazuk, W. Brad ; Li, Jingping ; Guo, Hui ; Lee, Tae Ho ; Wang, Yupeng ; Zhang, Dong ; Paterson, Andrew H. ; Wang, Xiyin ; Tang, Haibao ; Barone, Amalia ; Chiusano, Maria Luisa ; Ercolano, Maria Raffaella ; D'Agostino, Nunzio ; Di Filippo, Miriam ; Traini, Alessandra ; Sanseverino, Walter ; Frusciante, Luigi ; Seymour, Graham B. ; Elharam, Mounir ; Fu, Ying ; Hua, Axin ; Kenton, Steven ; Lewis, Jennifer ; Lin, Shaoping ; Najar, Fares ; Lai, Hongshing ; Qin, Baifang ; Shi, Ruihua ; Qu, Chunmei ; White, Douglas ; White, James ; Xing, Yanbo ; Yang, Keqin ; Yi, Jing ; Yao, Ziyun ; Zhou, Liping ; Roe, Bruce A. ; Vezzi, Alessandro ; D'Angelo, Michela ; Zimbello, Rosanna ; Schiavon, Riccardo ; Caniato, Elisa ; Rigobello, Chiara ; Campagna, Davide ; Vitulo, Nicola ; Valle, Giorgio ; Nelson, David ; De Paoli, Emanuele ; Szinay, Dora ; De Jong, Hans H. ; Bai, Yuling ; Visser, Richard G.F. ; Lankhorst, Reném Klein ; Beasley, Helen ; McLaren, Karen ; Nicholson, Christine ; Riddle, Claire ; Gianese, Giulio. / The tomato genome sequence provides insights into fleshy fruit evolution. In: Nature. 2012 ; Vol. 485, No. 7400. pp. 635-641.
@article{43f23f1b53e640298386072b232ba162,
title = "The tomato genome sequence provides insights into fleshy fruit evolution",
abstract = "Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium, and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6{\%} nucleotide divergence and signs of recent admixture, but show more than 8{\%} divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness.",
author = "Shusei Sato and Satoshi Tabata and Hideki Hirakawa and Erika Asamizu and Kenta Shirasawa and Sachiko Isobe and Takakazu Kaneko and Yasukazu Nakamura and Daisuke Shibata and Koh Aoki and Michael Egholm and James Knight and Robert Bogden and Changbao Li and Yang Shuang and Xun Xu and Shengkai Pan and Shifeng Cheng and Xin Liu and Yuanyuan Ren and Jun Wang and Alessandro Albiero and {Dal Pero}, Francesca and Sara Todesco and {Van Eck}, Joyce and Buels, {Robert M.} and Aureliano Bombarely and Gosselin, {Joseph R.} and Minyun Huang and Leto, {Jonathan A.} and Naama Menda and Susan Strickler and Linyong Mao and Shan Gao and Tecle, {Isaak Y.} and Thomas York and Yi Zheng and Vrebalov, {Julia T.} and Jemin Lee and Silin Zhong and Mueller, {Lukas A.} and Stiekema, {Willem J.} and Paolo Ribeca and Tyler Alioto and Wencai Yang and Sanwen Huang and Yongchen Du and Zhonghua Zhang and Jianchang Gao and Yanmei Guo and Xiaoxuan Wang and Ying Li and Jun He and Chuanyou Li and Zhukuan Cheng and Jianru Zuo and Jianfeng Ren and Jiuhai Zhao and Liuhua Yan and Hongling Jiang and Bao Wang and Hongshuang Li and Zhenjun Li and Fuyou Fu and Bingtang Chen and Bin Han and Qi Feng and Danlin Fan and Ying Wang and Hongqing Ling and Yongbiao Xue and Doreen Ware and {Richard McCombie}, W. and Lippman, {Zachary B.} and Chia, {Jer Ming} and Ke Jiang and Shiran Pasternak and Laura Gelley and Melissa Kramer and Anderson, {Lorinda K.} and Chang, {Song Bin} and Royer, {Suzanne M.} and Shearer, {Lindsay A.} and Stack, {Stephen M.} and Rose, {Jocelyn K.C.} and Yimin Xu and Nancy Eannetta and Matas, {Antonio J.} and Ryan McQuinn and Tanksley, {Steven D.} and Francisco Camara and Roderic Guig{\'o} and Stephane Rombauts and Jeffrey Fawcett and {Van De Peer}, Yves and Dani Zamir and Chunbo Liang and Manuel Spannagl and Heidrun Gundlach and Remy Bruggmann and Klaus Mayer and Zhiqi Jia and Junhong Zhang and Zhibiao Ye and Bishop, {Gerard J.} and Sarah Butcher and Rosa Lopez-Cobollo and Daniel Buchan and Ioannis Filippis and James Abbott and Dixit, {Institute Rekha} and Manju Singh and Archana Singh and Pal, {Jitendra Kumar} and Awadhesh Pandit and Singh, {Pradeep Kumar} and Mahato, {Ajay Kumar} and Vivek Dogra and Kishor Gaikwad and Sharma, {Tilak Raj} and Trilochan Mohapatra and Singh, {Nagendra Kumar} and Mathilde Causse and Christophe Rothan and Celine Noirot and Arnaud Bellec and Christophe Klopp and Corinne Delalande and Helene Berges and Jerome Mariette and Pierre Frasse and Sonia Vautrin and Zouine, {Toulouse Mohamed} and Alain Latch{\'e} and Christine Rousseau and Farid Regad and Pech, {Jean Claude} and Murielle Philippot and Mondher Bouzayen and Pierre Pericard and Sonia Osorio and {Del Carmen}, {Asuncion Fernandez} and Antonio Monforte and Antonio Granell and Rafael Fernandez-Mu{\~n}oz and Mariana Conte and Gabriel Lichtenstein and Fernando Carrari and {De Bellis}, Gianluca and Fabio Fuligni and Clelia Peano and Silvana Grandillo and Pasquale Termolino and Marco Pietrella and Elio Fantini and Giulia Falcone and Alessia Fiore and Giovanni Giuliano and Loredana Lopez and Paolo Facella and Gaetano Perrotta and Loretta Daddiego and Glenn Bryan and Orozco, {Biology Modesto} and Xavier Pastor and David Torrents and {Van Schriek}, {Marco G.M.} and Feron, {Richard M.C.} and {Van Oeveren}, Jan and {De Heer}, Peter and {Da Ponte}, Lorena and Saskia Jacobs-Oomen and Mike Cariaso and Marcel Prins and {Van Eijk}, {Michiel J.T.} and Antoine Janssen and {Van Haaren}, {J. J.} and Sung -HwanJo and Jungeun Kim and Kwon, {Suk Yoon} and Sangmi Kim and Koo, {Dal Hoe} and Sanghyeob Lee and Christopher Clouser and Alain Rico and Asis Hallab and Christiane Gebhardt and Kathrin Klee and Anika J{\"o}cker and Jens Warfsmann and Ulrike G{\"o}bel and Shingo Kawamura and Entaro Yano and Sherman, {Jamie D.} and Hiroyuki Fukuoka and Satomi Negoro and Sarita Bhutty and Parul Chowdhury and Debasis Chattopadhyay and Erwin Datema and Sandra Smit and Schijlen, {Elio G.W.M.} and {Van De Belt}, Jose and {Van Haarst}, {Jan C.} and Peters, {Sander A.} and {Van Staveren}, {Marjo J.} and Henkens, {Marleen H.C.} and Mooyman, {Paul J.W.} and Thamara Hesselink and {Van Ham}, {Roeland C.H.J.} and Guoyong Jiang and Marcus Droege and Doil Choi and Kang, {Byung Cheol} and Kim, {Byung Dong} and Minkyu Park and Seungill Kim and Yeom, {Seon In} and Lee, {Yong Hwan} and Choi, {Yang Do} and Guangcun Li and Jianwei Gao and Yongsheng Liu and Shengxiong Huang and Victoria Fernandez-Pedrosa and Carmen Collado and {Zu{\~n} Iga}, Sheila and Guoping Wang and Rebecca Cade and Dietrich, {Robert A.} and Jane Rogers and Sandra Knapp and Zhangjun Fei and White, {Ruth A.} and Thannhauser, {Theodore W.} and Giovannoni, {James J.} and Botella, {Miguel Angel} and Louise Gilbert and Gonzalez, {Fabra Ramon} and Goicoechea, {Jose Luis} and Yeisoo Yu and David Kudrna and Kristi Collura and Marina Wissotski and Rod Wing and Meyers, {Blake C.} and Gurazada, {Aishwarya Bala} and Green, {Pamela J.} and Saloni Mathur and Shailendra Vyas and Solanke, {Amolkumar U.} and Rahul Kumar and Vikrant Gupta and Sharma, {Arun K.} and Paramjit Khurana and Khurana, {Jitendra P.} and Tyagi, {Akhilesh K.} and Tamas Dalmay and Irina Mohorianu and Brandon Walts and Srikar Chamala and Barbazuk, {W. Brad} and Jingping Li and Hui Guo and Lee, {Tae Ho} and Yupeng Wang and Dong Zhang and Paterson, {Andrew H.} and Xiyin Wang and Haibao Tang and Amalia Barone and Chiusano, {Maria Luisa} and Ercolano, {Maria Raffaella} and Nunzio D'Agostino and {Di Filippo}, Miriam and Alessandra Traini and Walter Sanseverino and Luigi Frusciante and Seymour, {Graham B.} and Mounir Elharam and Ying Fu and Axin Hua and Steven Kenton and Jennifer Lewis and Shaoping Lin and Fares Najar and Hongshing Lai and Baifang Qin and Ruihua Shi and Chunmei Qu and Douglas White and James White and Yanbo Xing and Keqin Yang and Jing Yi and Ziyun Yao and Liping Zhou and Roe, {Bruce A.} and Alessandro Vezzi and Michela D'Angelo and Rosanna Zimbello and Riccardo Schiavon and Elisa Caniato and Chiara Rigobello and Davide Campagna and Nicola Vitulo and Giorgio Valle and David Nelson and {De Paoli}, Emanuele and Dora Szinay and {De Jong}, {Hans H.} and Yuling Bai and Visser, {Richard G.F.} and Lankhorst, {Ren{\'e}m Klein} and Helen Beasley and Karen McLaren and Christine Nicholson and Claire Riddle and Giulio Gianese",
year = "2012",
month = "10",
day = "23",
doi = "10.1038/nature11119",
language = "English (US)",
volume = "485",
pages = "635--641",
journal = "Nature",
issn = "0028-0836",
publisher = "Nature Publishing Group",
number = "7400",

}

TY - JOUR

T1 - The tomato genome sequence provides insights into fleshy fruit evolution

AU - Sato, Shusei

AU - Tabata, Satoshi

AU - Hirakawa, Hideki

AU - Asamizu, Erika

AU - Shirasawa, Kenta

AU - Isobe, Sachiko

AU - Kaneko, Takakazu

AU - Nakamura, Yasukazu

AU - Shibata, Daisuke

AU - Aoki, Koh

AU - Egholm, Michael

AU - Knight, James

AU - Bogden, Robert

AU - Li, Changbao

AU - Shuang, Yang

AU - Xu, Xun

AU - Pan, Shengkai

AU - Cheng, Shifeng

AU - Liu, Xin

AU - Ren, Yuanyuan

AU - Wang, Jun

AU - Albiero, Alessandro

AU - Dal Pero, Francesca

AU - Todesco, Sara

AU - Van Eck, Joyce

AU - Buels, Robert M.

AU - Bombarely, Aureliano

AU - Gosselin, Joseph R.

AU - Huang, Minyun

AU - Leto, Jonathan A.

AU - Menda, Naama

AU - Strickler, Susan

AU - Mao, Linyong

AU - Gao, Shan

AU - Tecle, Isaak Y.

AU - York, Thomas

AU - Zheng, Yi

AU - Vrebalov, Julia T.

AU - Lee, Jemin

AU - Zhong, Silin

AU - Mueller, Lukas A.

AU - Stiekema, Willem J.

AU - Ribeca, Paolo

AU - Alioto, Tyler

AU - Yang, Wencai

AU - Huang, Sanwen

AU - Du, Yongchen

AU - Zhang, Zhonghua

AU - Gao, Jianchang

AU - Guo, Yanmei

AU - Wang, Xiaoxuan

AU - Li, Ying

AU - He, Jun

AU - Li, Chuanyou

AU - Cheng, Zhukuan

AU - Zuo, Jianru

AU - Ren, Jianfeng

AU - Zhao, Jiuhai

AU - Yan, Liuhua

AU - Jiang, Hongling

AU - Wang, Bao

AU - Li, Hongshuang

AU - Li, Zhenjun

AU - Fu, Fuyou

AU - Chen, Bingtang

AU - Han, Bin

AU - Feng, Qi

AU - Fan, Danlin

AU - Wang, Ying

AU - Ling, Hongqing

AU - Xue, Yongbiao

AU - Ware, Doreen

AU - Richard McCombie, W.

AU - Lippman, Zachary B.

AU - Chia, Jer Ming

AU - Jiang, Ke

AU - Pasternak, Shiran

AU - Gelley, Laura

AU - Kramer, Melissa

AU - Anderson, Lorinda K.

AU - Chang, Song Bin

AU - Royer, Suzanne M.

AU - Shearer, Lindsay A.

AU - Stack, Stephen M.

AU - Rose, Jocelyn K.C.

AU - Xu, Yimin

AU - Eannetta, Nancy

AU - Matas, Antonio J.

AU - McQuinn, Ryan

AU - Tanksley, Steven D.

AU - Camara, Francisco

AU - Guigó, Roderic

AU - Rombauts, Stephane

AU - Fawcett, Jeffrey

AU - Van De Peer, Yves

AU - Zamir, Dani

AU - Liang, Chunbo

AU - Spannagl, Manuel

AU - Gundlach, Heidrun

AU - Bruggmann, Remy

AU - Mayer, Klaus

AU - Jia, Zhiqi

AU - Zhang, Junhong

AU - Ye, Zhibiao

AU - Bishop, Gerard J.

AU - Butcher, Sarah

AU - Lopez-Cobollo, Rosa

AU - Buchan, Daniel

AU - Filippis, Ioannis

AU - Abbott, James

AU - Dixit, Institute Rekha

AU - Singh, Manju

AU - Singh, Archana

AU - Pal, Jitendra Kumar

AU - Pandit, Awadhesh

AU - Singh, Pradeep Kumar

AU - Mahato, Ajay Kumar

AU - Dogra, Vivek

AU - Gaikwad, Kishor

AU - Sharma, Tilak Raj

AU - Mohapatra, Trilochan

AU - Singh, Nagendra Kumar

AU - Causse, Mathilde

AU - Rothan, Christophe

AU - Noirot, Celine

AU - Bellec, Arnaud

AU - Klopp, Christophe

AU - Delalande, Corinne

AU - Berges, Helene

AU - Mariette, Jerome

AU - Frasse, Pierre

AU - Vautrin, Sonia

AU - Zouine, Toulouse Mohamed

AU - Latché, Alain

AU - Rousseau, Christine

AU - Regad, Farid

AU - Pech, Jean Claude

AU - Philippot, Murielle

AU - Bouzayen, Mondher

AU - Pericard, Pierre

AU - Osorio, Sonia

AU - Del Carmen, Asuncion Fernandez

AU - Monforte, Antonio

AU - Granell, Antonio

AU - Fernandez-Muñoz, Rafael

AU - Conte, Mariana

AU - Lichtenstein, Gabriel

AU - Carrari, Fernando

AU - De Bellis, Gianluca

AU - Fuligni, Fabio

AU - Peano, Clelia

AU - Grandillo, Silvana

AU - Termolino, Pasquale

AU - Pietrella, Marco

AU - Fantini, Elio

AU - Falcone, Giulia

AU - Fiore, Alessia

AU - Giuliano, Giovanni

AU - Lopez, Loredana

AU - Facella, Paolo

AU - Perrotta, Gaetano

AU - Daddiego, Loretta

AU - Bryan, Glenn

AU - Orozco, Biology Modesto

AU - Pastor, Xavier

AU - Torrents, David

AU - Van Schriek, Marco G.M.

AU - Feron, Richard M.C.

AU - Van Oeveren, Jan

AU - De Heer, Peter

AU - Da Ponte, Lorena

AU - Jacobs-Oomen, Saskia

AU - Cariaso, Mike

AU - Prins, Marcel

AU - Van Eijk, Michiel J.T.

AU - Janssen, Antoine

AU - Van Haaren, J. J.

AU - -HwanJo, Sung

AU - Kim, Jungeun

AU - Kwon, Suk Yoon

AU - Kim, Sangmi

AU - Koo, Dal Hoe

AU - Lee, Sanghyeob

AU - Clouser, Christopher

AU - Rico, Alain

AU - Hallab, Asis

AU - Gebhardt, Christiane

AU - Klee, Kathrin

AU - Jöcker, Anika

AU - Warfsmann, Jens

AU - Göbel, Ulrike

AU - Kawamura, Shingo

AU - Yano, Entaro

AU - Sherman, Jamie D.

AU - Fukuoka, Hiroyuki

AU - Negoro, Satomi

AU - Bhutty, Sarita

AU - Chowdhury, Parul

AU - Chattopadhyay, Debasis

AU - Datema, Erwin

AU - Smit, Sandra

AU - Schijlen, Elio G.W.M.

AU - Van De Belt, Jose

AU - Van Haarst, Jan C.

AU - Peters, Sander A.

AU - Van Staveren, Marjo J.

AU - Henkens, Marleen H.C.

AU - Mooyman, Paul J.W.

AU - Hesselink, Thamara

AU - Van Ham, Roeland C.H.J.

AU - Jiang, Guoyong

AU - Droege, Marcus

AU - Choi, Doil

AU - Kang, Byung Cheol

AU - Kim, Byung Dong

AU - Park, Minkyu

AU - Kim, Seungill

AU - Yeom, Seon In

AU - Lee, Yong Hwan

AU - Choi, Yang Do

AU - Li, Guangcun

AU - Gao, Jianwei

AU - Liu, Yongsheng

AU - Huang, Shengxiong

AU - Fernandez-Pedrosa, Victoria

AU - Collado, Carmen

AU - Zuñ Iga, Sheila

AU - Wang, Guoping

AU - Cade, Rebecca

AU - Dietrich, Robert A.

AU - Rogers, Jane

AU - Knapp, Sandra

AU - Fei, Zhangjun

AU - White, Ruth A.

AU - Thannhauser, Theodore W.

AU - Giovannoni, James J.

AU - Botella, Miguel Angel

AU - Gilbert, Louise

AU - Gonzalez, Fabra Ramon

AU - Goicoechea, Jose Luis

AU - Yu, Yeisoo

AU - Kudrna, David

AU - Collura, Kristi

AU - Wissotski, Marina

AU - Wing, Rod

AU - Meyers, Blake C.

AU - Gurazada, Aishwarya Bala

AU - Green, Pamela J.

AU - Mathur, Saloni

AU - Vyas, Shailendra

AU - Solanke, Amolkumar U.

AU - Kumar, Rahul

AU - Gupta, Vikrant

AU - Sharma, Arun K.

AU - Khurana, Paramjit

AU - Khurana, Jitendra P.

AU - Tyagi, Akhilesh K.

AU - Dalmay, Tamas

AU - Mohorianu, Irina

AU - Walts, Brandon

AU - Chamala, Srikar

AU - Barbazuk, W. Brad

AU - Li, Jingping

AU - Guo, Hui

AU - Lee, Tae Ho

AU - Wang, Yupeng

AU - Zhang, Dong

AU - Paterson, Andrew H.

AU - Wang, Xiyin

AU - Tang, Haibao

AU - Barone, Amalia

AU - Chiusano, Maria Luisa

AU - Ercolano, Maria Raffaella

AU - D'Agostino, Nunzio

AU - Di Filippo, Miriam

AU - Traini, Alessandra

AU - Sanseverino, Walter

AU - Frusciante, Luigi

AU - Seymour, Graham B.

AU - Elharam, Mounir

AU - Fu, Ying

AU - Hua, Axin

AU - Kenton, Steven

AU - Lewis, Jennifer

AU - Lin, Shaoping

AU - Najar, Fares

AU - Lai, Hongshing

AU - Qin, Baifang

AU - Shi, Ruihua

AU - Qu, Chunmei

AU - White, Douglas

AU - White, James

AU - Xing, Yanbo

AU - Yang, Keqin

AU - Yi, Jing

AU - Yao, Ziyun

AU - Zhou, Liping

AU - Roe, Bruce A.

AU - Vezzi, Alessandro

AU - D'Angelo, Michela

AU - Zimbello, Rosanna

AU - Schiavon, Riccardo

AU - Caniato, Elisa

AU - Rigobello, Chiara

AU - Campagna, Davide

AU - Vitulo, Nicola

AU - Valle, Giorgio

AU - Nelson, David

AU - De Paoli, Emanuele

AU - Szinay, Dora

AU - De Jong, Hans H.

AU - Bai, Yuling

AU - Visser, Richard G.F.

AU - Lankhorst, Reném Klein

AU - Beasley, Helen

AU - McLaren, Karen

AU - Nicholson, Christine

AU - Riddle, Claire

AU - Gianese, Giulio

PY - 2012/10/23

Y1 - 2012/10/23

N2 - Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium, and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness.

AB - Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium, and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness.

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U2 - 10.1038/nature11119

DO - 10.1038/nature11119

M3 - Article

VL - 485

SP - 635

EP - 641

JO - Nature

JF - Nature

SN - 0028-0836

IS - 7400

ER -